HL_4V9M_168

3D structure

PDB id

4V9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

4V9M|1|DA|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9M_168 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3655

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V9M|1|DA|C|884
4V9M|1|DA|C|885
4V9M|1|DA|C|886
4V9M|1|DA|A|887
4V9M|1|DA|C|888
4V9M|1|DA|C|889
4V9M|1|DA|A|890
4V9M|1|DA|G|892

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CS

30S ribosomal protein S19

Chain DG

50S ribosomal protein L5