HL_4V9M_203

3D structure

PDB id

4V9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9M_203 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.3543

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V9M|1|DA|C|2471
4V9M|1|DA|G|2472
4V9M|1|DA|U|2473
4V9M|1|DA|C|2474
4V9M|1|DA|C|2475
4V9M|1|DA|A|2476
4V9M|1|DA|C|2477
4V9M|1|DA|A|2478
4V9M|1|DA|G|2479

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CY

Elongation factor G

Chain D9

50S ribosomal protein L36

Chain DH

50S ribosomal protein L6