HL_4V9N_199

3D structure

PDB id

4V9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9N_199 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.064

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

4V9N|1|DA|C|2324
4V9N|1|DA|G|2325
4V9N|1|DA|C|2326
4V9N|1|DA|A|2327
4V9N|1|DA|A|2328
4V9N|1|DA|G|2329
4V9N|1|DA|G|2330
4V9N|1|DA|G|2331

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CW

Transfer RNA; tRNA

Chain D0

50S ribosomal protein L27

Chain DG

50S ribosomal protein L5