HL_4V9N_232

3D structure

PDB id

4V9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGCUUGUCC

Length

9 nucleotides

Bulged bases

4V9N|1|DA|U|270|||L, 4V9N|1|DA|U|270|||O

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9N_232 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3014

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V9N|1|DA|G|270|||I
4V9N|1|DA|G|270|||J
4V9N|1|DA|C|270|||K
4V9N|1|DA|U|270|||L
4V9N|1|DA|U|270|||M
4V9N|1|DA|G|270|||N
4V9N|1|DA|U|270|||O
4V9N|1|DA|C|270|||P
4V9N|1|DA|C|270|||Q

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L28

Chain DI

50S ribosomal protein L9