HL_4V9O_021

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9O_021 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.1071

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V9O|1|AA|G|712
4V9O|1|AA|G|713
4V9O|1|AA|U|714
4V9O|1|AA|A|715
4V9O|1|AA|A|716
4V9O|1|AA|C|717
4V9O|1|AA|A|718
4V9O|1|AA|C|719

Current chains

Chain AA

23S rRNA

Nearby chains

Chain AC

50S ribosomal protein L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BO

30S ribosomal protein S15