3D structure

PDB id
4V9O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Control of ribosomal subunit rotation by elongation factor G
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UUUUGUAUAA
Length
10 nucleotides
Bulged bases
4V9O|1|EA|A|574
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V9O_224 not in the Motif Atlas
Geometric match to HL_5J7L_150
Geometric discrepancy: 0.0703
The information below is about HL_5J7L_150
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.7
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
139

Unit IDs

4V9O|1|EA|U|566
4V9O|1|EA|U|567
4V9O|1|EA|U|568
4V9O|1|EA|U|569
4V9O|1|EA|G|570
4V9O|1|EA|U|571
4V9O|1|EA|A|572
4V9O|1|EA|U|573
4V9O|1|EA|A|574
4V9O|1|EA|A|575

Current chains

Chain EA
23S rRNA

Nearby chains

Chain E0
50S ribosomal protein L32
Chain ED
50S ribosomal protein L3
Chain EL
50S ribosomal protein L15
Chain ER
50S ribosomal protein L21

Coloring options:


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