HL_4V9O_224

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

4V9O|1|EA|A|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9O_224 not in the Motif Atlas

Geometric match to HL_5J7L_150

Geometric discrepancy: 0.0703

The information below is about HL_5J7L_150

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.7

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

4V9O|1|EA|U|566
4V9O|1|EA|U|567
4V9O|1|EA|U|568
4V9O|1|EA|U|569
4V9O|1|EA|G|570
4V9O|1|EA|U|571
4V9O|1|EA|A|572
4V9O|1|EA|U|573
4V9O|1|EA|A|574
4V9O|1|EA|A|575

Current chains

Chain EA

23S rRNA

Nearby chains

Chain E0

50S ribosomal protein L32

Chain ED

50S ribosomal protein L3

Chain EL

50S ribosomal protein L15

Chain ER

50S ribosomal protein L21