HL_4V9O_258

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCUUGAUGGAAGUGUGGACGCCAGUCUGCAUGGCUUUAAUG

Length

41 nucleotides

Bulged bases

4V9O|1|EA|U|2109, 4V9O|1|EA|G|2110, 4V9O|1|EA|G|2133, 4V9O|1|EA|U|2139, 4V9O|1|EA|C|2143, 4V9O|1|EA|C|2145, 4V9O|1|EA|C|2146, 4V9O|1|EA|G|2148, 4V9O|1|EA|G|2152, 4V9O|1|EA|G|2157, 4V9O|1|EA|C|2179, 4V9O|1|EA|U|2181

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9O|1|EA|C|2103
4V9O|1|EA|C|2104
4V9O|1|EA|U|2105
4V9O|1|EA|U|2106
4V9O|1|EA|G|2107
4V9O|1|EA|A|2108
4V9O|1|EA|U|2109
4V9O|1|EA|G|2110
4V9O|1|EA|G|2133
4V9O|1|EA|A|2134
4V9O|1|EA|A|2135
4V9O|1|EA|G|2136
4V9O|1|EA|U|2137
4V9O|1|EA|G|2138
4V9O|1|EA|U|2139
4V9O|1|EA|G|2140
4V9O|1|EA|G|2141
4V9O|1|EA|A|2142
4V9O|1|EA|C|2143
4V9O|1|EA|G|2144
4V9O|1|EA|C|2145
4V9O|1|EA|C|2146
4V9O|1|EA|A|2147
4V9O|1|EA|G|2148
4V9O|1|EA|U|2149
4V9O|1|EA|C|2150
4V9O|1|EA|U|2151
4V9O|1|EA|G|2152
4V9O|1|EA|C|2153
4V9O|1|EA|A|2154
4V9O|1|EA|U|2155
4V9O|1|EA|G|2156
4V9O|1|EA|G|2157
4V9O|1|EA|C|2179
4V9O|1|EA|U|2180
4V9O|1|EA|U|2181
4V9O|1|EA|U|2182
4V9O|1|EA|A|2183
4V9O|1|EA|A|2184
4V9O|1|EA|U|2185
4V9O|1|EA|G|2186

Current chains

Chain EA

23S rRNA

Nearby chains