HL_4V9O_421

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

4V9O|1|DA|U|1030, 4V9O|1|DA|C|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9O_421 not in the Motif Atlas

Geometric match to HL_1FIR_001

Geometric discrepancy: 0.3771

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

4V9O|1|DA|C|1027
4V9O|1|DA|C|1028
4V9O|1|DA|U|1029
4V9O|1|DA|U|1030
4V9O|1|DA|C|1031
4V9O|1|DA|G|1032
4V9O|1|DA|G|1033
4V9O|1|DA|G|1034

Current chains

Chain DA

16S rRNA

Nearby chains