HL_4V9O_430

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCCUUGAGG

Length

9 nucleotides

Bulged bases

4V9O|1|HA|C|841, 4V9O|1|HA|U|842, 4V9O|1|HA|U|843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9O_430 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.34

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

4V9O|1|HA|C|839
4V9O|1|HA|C|840
4V9O|1|HA|C|841
4V9O|1|HA|U|842
4V9O|1|HA|U|843
4V9O|1|HA|G|844
4V9O|1|HA|A|845
4V9O|1|HA|G|846
4V9O|1|HA|G|847

Current chains

Chain HA

16S rRNA

Nearby chains

Chain HB

30S ribosomal protein S2

Chain HR

30S ribosomal protein S18