HL_4V9P_037

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

4V9P|1|AA|C|1493, 4V9P|1|AA|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9P_037 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.0982

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4V9P|1|AA|G|1492
4V9P|1|AA|C|1493
4V9P|1|AA|A|1494
4V9P|1|AA|A|1495
4V9P|1|AA|A|1496
4V9P|1|AA|U|1497
4V9P|1|AA|C|1498

Current chains

Chain AA

23S rRNA

Nearby chains

Chain AC

50S ribosomal protein L2