HL_4V9P_051

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAGCCUUGAUGGAAGUGUGGACGCCAGUCUGCAUGGCUUUAAUGUUU

Length

47 nucleotides

Bulged bases

4V9P|1|AA|A|2108, 4V9P|1|AA|U|2109, 4V9P|1|AA|G|2110, 4V9P|1|AA|G|2138, 4V9P|1|AA|G|2140, 4V9P|1|AA|C|2143, 4V9P|1|AA|A|2147, 4V9P|1|AA|U|2149, 4V9P|1|AA|C|2179

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9P|1|AA|G|2100
4V9P|1|AA|A|2101
4V9P|1|AA|G|2102
4V9P|1|AA|C|2103
4V9P|1|AA|C|2104
4V9P|1|AA|U|2105
4V9P|1|AA|U|2106
4V9P|1|AA|G|2107
4V9P|1|AA|A|2108
4V9P|1|AA|U|2109
4V9P|1|AA|G|2110
4V9P|1|AA|G|2133
4V9P|1|AA|A|2134
4V9P|1|AA|A|2135
4V9P|1|AA|G|2136
4V9P|1|AA|U|2137
4V9P|1|AA|G|2138
4V9P|1|AA|U|2139
4V9P|1|AA|G|2140
4V9P|1|AA|G|2141
4V9P|1|AA|A|2142
4V9P|1|AA|C|2143
4V9P|1|AA|G|2144
4V9P|1|AA|C|2145
4V9P|1|AA|C|2146
4V9P|1|AA|A|2147
4V9P|1|AA|G|2148
4V9P|1|AA|U|2149
4V9P|1|AA|C|2150
4V9P|1|AA|U|2151
4V9P|1|AA|G|2152
4V9P|1|AA|C|2153
4V9P|1|AA|A|2154
4V9P|1|AA|U|2155
4V9P|1|AA|G|2156
4V9P|1|AA|G|2157
4V9P|1|AA|C|2179
4V9P|1|AA|U|2180
4V9P|1|AA|U|2181
4V9P|1|AA|U|2182
4V9P|1|AA|A|2183
4V9P|1|AA|A|2184
4V9P|1|AA|U|2185
4V9P|1|AA|G|2186
4V9P|1|AA|U|2187
4V9P|1|AA|U|2188
4V9P|1|AA|U|2189

Current chains

Chain AA

23S rRNA

Nearby chains

Chain AH

50S ribosomal protein L9