HL_4V9P_420

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAUGCAACGCG

Length

12 nucleotides

Bulged bases

4V9P|1|DA|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9P_420 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2127

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

4V9P|1|DA|C|962
4V9P|1|DA|G|963
4V9P|1|DA|A|964
4V9P|1|DA|U|965
4V9P|1|DA|G|966
4V9P|1|DA|C|967
4V9P|1|DA|A|968
4V9P|1|DA|A|969
4V9P|1|DA|C|970
4V9P|1|DA|G|971
4V9P|1|DA|C|972
4V9P|1|DA|G|973

Current chains

Chain DA

16S rRNA

Nearby chains

Chain DI

30S ribosomal protein S9

Chain DJ

30S ribosomal protein S10

Chain DM

30S ribosomal protein S13

Chain DN

30S ribosomal protein S14

Chain DV

elongation factor G