HL_4V9P_426

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACGCUUAUGCGU

Length

12 nucleotides

Bulged bases

4V9P|1|GA|C|1170, 4V9P|1|GA|U|1173, 4V9P|1|GA|U|1174, 4V9P|1|GA|A|1175, 4V9P|1|GA|U|1176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9P_426 not in the Motif Atlas

Homologous match to HL_5J7L_163

Geometric discrepancy: 0.4486

The information below is about HL_5J7L_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V9P|1|GA|A|1169
4V9P|1|GA|C|1170
4V9P|1|GA|G|1171
4V9P|1|GA|C|1172
4V9P|1|GA|U|1173
4V9P|1|GA|U|1174
4V9P|1|GA|A|1175
4V9P|1|GA|U|1176
4V9P|1|GA|G|1177
4V9P|1|GA|C|1178
4V9P|1|GA|G|1179
4V9P|1|GA|U|1180

Current chains

Chain GA

23S rRNA

Nearby chains

Chain GL

50S ribosomal protein L15

Chain GR

50S ribosomal protein L21