HL_4V9Q_013

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

4V9Q|1|AA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_013 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.071

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V9Q|1|AA|G|382
4V9Q|1|AA|U|383
4V9Q|1|AA|U|384
4V9Q|1|AA|C|385
4V9Q|1|AA|G|386
4V9Q|1|AA|U|387
4V9Q|1|AA|G|388
4V9Q|1|AA|G|389
4V9Q|1|AA|A|390
4V9Q|1|AA|G|391
4V9Q|1|AA|C|392

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AL

50S ribosomal protein L15

Chain AX

50S ribosomal protein L28