HL_4V9Q_038

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_038 not in the Motif Atlas

Geometric match to HL_5VSU_001

Geometric discrepancy: 0.3996

The information below is about HL_5VSU_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4V9Q|1|AA|C|1533
4V9Q|1|AA|G|1534
4V9Q|1|AA|U|1535
4V9Q|1|AA|A|1536
4V9Q|1|AA|C|1537
4V9Q|1|AA|G|1538

Current chains

Chain AA

23S ribosomal RNA

Nearby chains