HL_4V9Q_053

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4V9Q|1|AA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_053 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1186

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V9Q|1|AA|C|2248
4V9Q|1|AA|U|2249
4V9Q|1|AA|G|2250
4V9Q|1|AA|G|2251
4V9Q|1|AA|G|2252
4V9Q|1|AA|G|2253
4V9Q|1|AA|C|2254
4V9Q|1|AA|G|2255
4V9Q|1|AA|G|2256

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AM

50S ribosomal protein L16

Chain AW

50S ribosomal protein L27

Chain BV

Transfer RNA; tRNA