HL_4V9Q_068

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAAGACUAC

Length

9 nucleotides

Bulged bases

4V9Q|1|AA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_068 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.0972

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V9Q|1|AA|G|2819
4V9Q|1|AA|A|2820
4V9Q|1|AA|A|2821
4V9Q|1|AA|G|2822
4V9Q|1|AA|A|2823
4V9Q|1|AA|C|2824
4V9Q|1|AA|U|2825
4V9Q|1|AA|A|2826
4V9Q|1|AA|C|2827

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AN

50S ribosomal protein L17