HL_4V9Q_074

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_074 not in the Motif Atlas

Geometric match to HL_4LFB_003

Geometric discrepancy: 0.1307

The information below is about HL_4LFB_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V9Q|1|BA|G|158
4V9Q|1|BA|G|159
4V9Q|1|BA|A|160
4V9Q|1|BA|A|161
4V9Q|1|BA|A|162
4V9Q|1|BA|C|163

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BT

30S ribosomal protein S20