HL_4V9Q_090

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_090 not in the Motif Atlas

Homologous match to HL_4LFB_019

Geometric discrepancy: 0.0714

The information below is about HL_4LFB_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V9Q|1|BA|C|862
4V9Q|1|BA|U|863
4V9Q|1|BA|A|864
4V9Q|1|BA|A|865
4V9Q|1|BA|C|866
4V9Q|1|BA|G|867

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BE

30S ribosomal protein S5

Chain BH

30S ribosomal protein S8