HL_4V9Q_108
3D structure
- PDB id
- 4V9Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 4V9Q|1|BW|U|33
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V9Q_108 not in the Motif Atlas
- Homologous match to HL_1U0B_002
- Geometric discrepancy: 0.2632
- The information below is about HL_1U0B_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
4V9Q|1|BW|G|31
4V9Q|1|BW|C|32
4V9Q|1|BW|U|33
4V9Q|1|BW|C|34
4V9Q|1|BW|A|35
4V9Q|1|BW|U|36
4V9Q|1|BW|A|37
4V9Q|1|BW|A|38
4V9Q|1|BW|C|39
Current chains
- Chain BW
- tRNA
Nearby chains
- Chain BA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BG
- 30S ribosomal protein S7
- Chain BK
- 30S ribosomal protein S11
- Chain BV
- Transfer RNA; tRNA
- Chain BX
- mRNA
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