HL_4V9Q_123

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

4V9Q|1|CA|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_123 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.1021

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

4V9Q|1|CA|G|410
4V9Q|1|CA|G|411
4V9Q|1|CA|A|412
4V9Q|1|CA|C|413
4V9Q|1|CA|C|414
4V9Q|1|CA|A|415
4V9Q|1|CA|C|416
4V9Q|1|CA|C|417

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CL

50S ribosomal protein L15