HL_4V9Q_133

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

4V9Q|1|CA|A|781, 4V9Q|1|CA|A|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_133 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1299

The information below is about HL_7A0S_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

4V9Q|1|CA|U|779
4V9Q|1|CA|G|780
4V9Q|1|CA|A|781
4V9Q|1|CA|A|782
4V9Q|1|CA|A|783
4V9Q|1|CA|A|784
4V9Q|1|CA|G|785

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CD

50S ribosomal protein L2