HL_4V9Q_139

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAUGAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_139 not in the Motif Atlas

Geometric match to HL_5TBW_063

Geometric discrepancy: 0.3424

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V9Q|1|CA|G|1171
4V9Q|1|CA|G|1173
4V9Q|1|CA|A|1174
4V9Q|1|CA|U|1175
4V9Q|1|CA|G|1176
4V9Q|1|CA|A|1177
4V9Q|1|CA|C|1178

Current chains

Chain CA

23S ribosomal RNA

Nearby chains