HL_4V9Q_148

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAG

Length

4 nucleotides

Bulged bases

4V9Q|1|CA|A|1566

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_148 not in the Motif Atlas

Homologous match to HL_7A0S_039

Geometric discrepancy: 0.1138

The information below is about HL_7A0S_039

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4V9Q|1|CA|C|1565
4V9Q|1|CA|A|1566
4V9Q|1|CA|A|1567
4V9Q|1|CA|G|1568

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CD

50S ribosomal protein L2