HL_4V9Q_168

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_168 not in the Motif Atlas

Homologous match to HL_4WF9_055

Geometric discrepancy: 0.13

The information below is about HL_4WF9_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V9Q|1|CA|C|2404
4V9Q|1|CA|G|2405
4V9Q|1|CA|U|2406
4V9Q|1|CA|G|2407
4V9Q|1|CA|U|2408
4V9Q|1|CA|G|2409
4V9Q|1|CA|G|2410
4V9Q|1|CA|A|2411
4V9Q|1|CA|A|2412
4V9Q|1|CA|G|2413

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CL

50S ribosomal protein L15

Chain CX

50S ribosomal protein L28