HL_4V9Q_179

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAUUCCG

Length

7 nucleotides

Bulged bases

4V9Q|1|CB|U|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_179 not in the Motif Atlas

Homologous match to HL_5J7L_203

Geometric discrepancy: 0.1453

The information below is about HL_5J7L_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47787.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4V9Q|1|CB|C|38
4V9Q|1|CB|A|39
4V9Q|1|CB|U|40
4V9Q|1|CB|U|41
4V9Q|1|CB|C|42
4V9Q|1|CB|C|43
4V9Q|1|CB|G|44

Current chains

Chain CB

5S ribosomal RNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA

Chain CG

50S ribosomal protein L5

Chain CO

50S ribosomal protein L18