HL_4V9Q_187

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_187 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.0991

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V9Q|1|DA|U|296
4V9Q|1|DA|G|297
4V9Q|1|DA|A|298
4V9Q|1|DA|G|299
4V9Q|1|DA|A|300
4V9Q|1|DA|G|301

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DD

30S ribosomal protein S4

Chain DE

30S ribosomal protein S5

Chain DL

30S ribosomal protein S12

Chain DQ

30S ribosomal protein S17