HL_4V9Q_189

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4V9Q|1|DA|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_189 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.1725

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V9Q|1|DA|C|342
4V9Q|1|DA|U|343
4V9Q|1|DA|A|344
4V9Q|1|DA|C|345
4V9Q|1|DA|G|346
4V9Q|1|DA|G|347

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain CK

50S ribosomal protein L14

Chain CP

50S ribosomal protein L19