HL_4V9Q_204

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_204 not in the Motif Atlas

Geometric match to HL_4V9F_033

Geometric discrepancy: 0.1097

The information below is about HL_4V9F_033

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V9Q|1|DA|C|1076
4V9Q|1|DA|G|1077
4V9Q|1|DA|U|1078
4V9Q|1|DA|G|1079
4V9Q|1|DA|A|1080
4V9Q|1|DA|G|1081

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DB

30S ribosomal protein S2

Chain DE

30S ribosomal protein S5

Chain DH

30S ribosomal protein S8