HL_4V9Q_214

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCUCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

4V9Q|1|DV|G|31
4V9Q|1|DV|C|32
4V9Q|1|DV|U|33
4V9Q|1|DV|C|34
4V9Q|1|DV|A|35
4V9Q|1|DV|U|36
4V9Q|1|DV|A|37
4V9Q|1|DV|A|38
4V9Q|1|DV|C|39

Current chains

Chain DV

tRNA

Nearby chains

Chain DA

Small subunit ribosomal RNA; SSU rRNA

Chain DI

30S ribosomal protein S9

Chain DW

Transfer RNA; tRNA

Chain DX

mRNA