3D structure

PDB id
4V9Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GUUCAAAUC
Length
9 nucleotides
Bulged bases (A, C, G, U)
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_22280.5
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
71

Unit IDs

4V9Q|1|DV|G|53
4V9Q|1|DV|U|54
4V9Q|1|DV|U|55
4V9Q|1|DV|C|56
4V9Q|1|DV|A|57
4V9Q|1|DV|A|58
4V9Q|1|DV|A|59
4V9Q|1|DV|U|60
4V9Q|1|DV|C|61

Current chains

Chain DV
tRNA

Nearby chains

Chain CA
Large subunit ribosomal RNA; LSU rRNA
Chain CG
50S ribosomal protein L5
Chain CM
50S ribosomal protein L16

Coloring options:

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