HL_4V9Q_236

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

4V9Q|1|AA|A|2305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9Q_236 not in the Motif Atlas

Homologous match to HL_7A0S_076

Geometric discrepancy: 0.4786

The information below is about HL_7A0S_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V9Q|1|AA|G|2304
4V9Q|1|AA|A|2305
4V9Q|1|AA|C|2306
4V9Q|1|AA|G|2307
4V9Q|1|AA|G|2308
4V9Q|1|AA|A|2309
4V9Q|1|AA|A|2310
4V9Q|1|AA|A|2311
4V9Q|1|AA|U|2312

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AG

50S ribosomal protein L5