HL_4V9Q_237

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGGCCCACCAGCCUAC

Length

17 nucleotides

Bulged bases

4V9Q|1|CA|C|885, 4V9Q|1|CA|C|888, 4V9Q|1|CA|C|889, 4V9Q|1|CA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9Q|1|CA|G|880
4V9Q|1|CA|G|881
4V9Q|1|CA|G|882
4V9Q|1|CA|G|883
4V9Q|1|CA|C|884
4V9Q|1|CA|C|885
4V9Q|1|CA|C|886
4V9Q|1|CA|A|887
4V9Q|1|CA|C|888
4V9Q|1|CA|C|889
4V9Q|1|CA|A|890
4V9Q|1|CA|G|892
4V9Q|1|CA|C|893
4V9Q|1|CA|C|894
4V9Q|1|CA|U|895
4V9Q|1|CA|A|896
4V9Q|1|CA|C|897

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CM

50S ribosomal protein L16

Chain CV

50S ribosomal protein L25

Chain DM

30S ribosomal protein S13