HL_4V9S_041

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4V9S|1|BA|A|185

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9S_041 not in the Motif Atlas

Geometric match to HL_7RQB_006

Geometric discrepancy: 0.0556

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

4V9S|1|BA|G|183
4V9S|1|BA|A|184
4V9S|1|BA|A|185
4V9S|1|BA|A|186
4V9S|1|BA|C|187
4V9S|1|BA|A|188
4V9S|1|BA|U|189
4V9S|1|BA|C|190

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S Ribosomal Protein L28

Chain BP

50S Ribosomal Protein L15