HL_4V9S_089

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9S_089 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.073

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V9S|1|BA|G|2315
4V9S|1|BA|G|2316
4V9S|1|BA|A|2317
4V9S|1|BA|C|2318
4V9S|1|BA|G|2319
4V9S|1|BA|G|2320
4V9S|1|BA|A|2321
4V9S|1|BA|A|2322
4V9S|1|BA|A|2323
4V9S|1|BA|U|2324
4V9S|1|BA|C|2325

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BG

50S Ribosomal Protein L5