HL_4V9S_137
3D structure
- PDB id
- 4V9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antibiotic GE82832 bound to 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 4V9S|1|CX|C|16, 4V9S|1|CX|G|18, 4V9S|1|CX|G|19, 4V9S|1|CX|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V9S_137 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.1567
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
4V9S|1|CX|C|13
4V9S|1|CX|A|14
4V9S|1|CX|G|15
4V9S|1|CX|C|16
4V9S|1|CX|C|17
4V9S|1|CX|U|17|||A
4V9S|1|CX|G|18
4V9S|1|CX|G|19
4V9S|1|CX|U|20
4V9S|1|CX|A|21
4V9S|1|CX|G|22
Current chains
- Chain CX
- P-site tRNA
Nearby chains
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DG
- 50S Ribosomal Protein L5
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