HL_4V9S_139
3D structure
- PDB id
- 4V9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antibiotic GE82832 bound to 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V9S_139 not in the Motif Atlas
- Homologous match to HL_4YCO_003
- Geometric discrepancy: 0.0852
- The information below is about HL_4YCO_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
4V9S|1|CX|G|53
4V9S|1|CX|U|54
4V9S|1|CX|U|55
4V9S|1|CX|C|56
4V9S|1|CX|A|57
4V9S|1|CX|A|58
4V9S|1|CX|A|59
4V9S|1|CX|U|60
4V9S|1|CX|C|61
Current chains
- Chain CX
- P-site tRNA
Nearby chains
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DG
- 50S Ribosomal Protein L5
- Chain DQ
- 50S Ribosomal Protein L16
Coloring options: