HL_4V9S_198

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9S_198 not in the Motif Atlas

Homologous match to HL_7RQB_060

Geometric discrepancy: 0.1227

The information below is about HL_7RQB_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

4V9S|1|DA|C|2471
4V9S|1|DA|G|2472
4V9S|1|DA|U|2473
4V9S|1|DA|C|2474
4V9S|1|DA|C|2475
4V9S|1|DA|A|2476
4V9S|1|DA|C|2477
4V9S|1|DA|A|2478
4V9S|1|DA|G|2479

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D9

50S Ribosomal Protein L36

Chain DH

50S Ribosomal Protein L6

Chain DQ

50S Ribosomal Protein L16