HL_4W23_009

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

4W23|1|2|C|450, 4W23|1|2|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_94364.2

Basepair signature

cWW-tWH-R-tWH-R-R-R

Number of instances in this motif group

5

Unit IDs

4W23|1|2|C|441
4W23|1|2|C|442
4W23|1|2|U|443
4W23|1|2|G|444
4W23|1|2|A|445
4W23|1|2|G|446
4W23|1|2|A|447
4W23|1|2|A|448
4W23|1|2|A|449
4W23|1|2|C|450
4W23|1|2|G|451
4W23|1|2|G|452

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain G

Ribosomal protein eS6

Chain I

Ribosomal protein eS8