HL_4W23_011

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCCGACCCGGG

Length

11 nucleotides

Bulged bases

4W23|1|2|A|500, 4W23|1|2|C|502, 4W23|1|2|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61400.1

Basepair signature

cWW-R-R-R-R-R

Number of instances in this motif group

1

Unit IDs

4W23|1|2|C|496
4W23|1|2|C|497
4W23|1|2|C|498
4W23|1|2|G|499
4W23|1|2|A|500
4W23|1|2|C|501
4W23|1|2|C|502
4W23|1|2|C|503
4W23|1|2|G|504
4W23|1|2|G|505
4W23|1|2|G|506

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain Y

Ribosomal protein eS24