3D structure

PDB id
4W23 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UCCACUUUAAAUCCUUCCG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_70061.1
Basepair signature
cWW-cWH-cWW-R-R-R-R-R-tSH-R-R-R-R-R-R
Number of instances in this motif group
1

Unit IDs

4W23|1|2|U|566
4W23|1|2|C|567
4W23|1|2|C|568
4W23|1|2|A|569
4W23|1|2|C|570
4W23|1|2|U|571
4W23|1|2|U|572
4W23|1|2|U|573
4W23|1|2|A|574
4W23|1|2|A|575
4W23|1|2|A|576
4W23|1|2|U|577
4W23|1|2|C|578
4W23|1|2|C|579
4W23|1|2|U|580
4W23|1|2|U|581
4W23|1|2|C|582
4W23|1|2|C|583
4W23|1|2|G|584

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain J
Ribosomal protein uS4
Chain Y
Ribosomal protein eS24

Coloring options:

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