HL_4W23_016

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUCUCGGCGGGGCCCGAAG*G

Length

21 nucleotides

Bulged bases

None detected

QA status

Incomplete nucleotides: 745, 746, 747, 748, 749, 750, 751, 752, 753, 786, 787, 788, 789, 790, 791, 792, 793, 794, 795, 796

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W23|1|2|C|745
4W23|1|2|C|746
4W23|1|2|U|747
4W23|1|2|C|748
4W23|1|2|U|749
4W23|1|2|C|750
4W23|1|2|G|751
4W23|1|2|G|752
4W23|1|2|C|753
4W23|1|2|G|786
4W23|1|2|G|787
4W23|1|2|G|788
4W23|1|2|G|789
4W23|1|2|C|790
4W23|1|2|C|791
4W23|1|2|C|792
4W23|1|2|G|793
4W23|1|2|A|794
4W23|1|2|A|795
4W23|1|2|G|796
*
4W23|1|2|G|796

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain G

Ribosomal protein eS6

Chain H

Ribosomal protein eS7

Chain L

Ribosomal protein uS17