HL_4W23_021

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCGUUAUUCCCAUGACC

Length

17 nucleotides

Bulged bases

4W23|1|2|C|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45777.1

Basepair signature

cWW-L-R-cWW-R-tSH-tWW-R-cHW-R

Number of instances in this motif group

1

Unit IDs

4W23|1|2|G|1108
4W23|1|2|C|1109
4W23|1|2|G|1110
4W23|1|2|U|1111
4W23|1|2|U|1112
4W23|1|2|A|1113
4W23|1|2|U|1114
4W23|1|2|U|1115
4W23|1|2|C|1116
4W23|1|2|C|1117
4W23|1|2|C|1118
4W23|1|2|A|1119
4W23|1|2|U|1120
4W23|1|2|G|1121
4W23|1|2|A|1122
4W23|1|2|C|1123
4W23|1|2|C|1124

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uS2

Chain B

Ribosomal protein eS1

Chain R

Ribosomal protein eS17

Chain b

Ribosomal protein eS27