HL_4W23_024

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGACUCAACACG

Length

12 nucleotides

Bulged bases

4W23|1|2|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56596.1

Basepair signature

cWW-R-R-R-R-R-R-R

Number of instances in this motif group

1

Unit IDs

4W23|1|2|U|1244
4W23|1|2|G|1245
4W23|1|2|A|1246
4W23|1|2|C|1247
4W23|1|2|U|1248
4W23|1|2|C|1249
4W23|1|2|A|1250
4W23|1|2|A|1251
4W23|1|2|C|1252
4W23|1|2|A|1253
4W23|1|2|C|1254
4W23|1|2|G|1255

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

Ribosomal protein uS9

Chain S

Ribosomal protein uS13

Chain U

Ribosomal protein uS10

Chain d

Ribosomal protein uS14