HL_4W23_025

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUCC

Length

38 nucleotides

Bulged bases

4W23|1|2|C|1283, 4W23|1|2|G|1285, 4W23|1|2|C|1292, 4W23|1|2|U|1300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64859.1

Basepair signature

cWW-cWW-tWW-cWH-cSH-cSS-L-L-tHS-cSH-R-R-cSH-L-cWW-R-R-R-R-R-R-tSH-R-R-R-R

Number of instances in this motif group

1

Unit IDs

4W23|1|2|G|1280
4W23|1|2|G|1281
4W23|1|2|A|1282
4W23|1|2|C|1283
4W23|1|2|A|1284
4W23|1|2|G|1285
4W23|1|2|G|1286
4W23|1|2|A|1287
4W23|1|2|U|1288
4W23|1|2|U|1289
4W23|1|2|G|1290
4W23|1|2|A|1291
4W23|1|2|C|1292
4W23|1|2|A|1293
4W23|1|2|G|1294
4W23|1|2|A|1295
4W23|1|2|U|1296
4W23|1|2|U|1297
4W23|1|2|G|1298
4W23|1|2|A|1299
4W23|1|2|U|1300
4W23|1|2|A|1301
4W23|1|2|G|1302
4W23|1|2|C|1303
4W23|1|2|U|1304
4W23|1|2|C|1305
4W23|1|2|U|1306
4W23|1|2|U|1307
4W23|1|2|U|1308
4W23|1|2|C|1309
4W23|1|2|U|1310
4W23|1|2|C|1311
4W23|1|2|G|1312
4W23|1|2|A|1313
4W23|1|2|U|1314
4W23|1|2|U|1315
4W23|1|2|C|1316
4W23|1|2|C|1317

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

Ribosomal protein eS10

Chain M

Ribosomal protein eS12

Chain P

Ribosomal protein uS19

Chain d

Ribosomal protein uS14

Chain f

Ribosomal protein eS31