HL_4W23_031

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

4W23|1|2|U|1621, 4W23|1|2|U|1622, 4W23|1|2|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89131.2

Basepair signature

cWW-cWH-R-R-tWH-R-R-R

Number of instances in this motif group

4

Unit IDs

4W23|1|2|A|1614
4W23|1|2|U|1615
4W23|1|2|U|1616
4W23|1|2|G|1617
4W23|1|2|C|1618
4W23|1|2|A|1619
4W23|1|2|A|1620
4W23|1|2|U|1621
4W23|1|2|U|1622
4W23|1|2|A|1623
4W23|1|2|U|1624
4W23|1|2|U|1625

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

Ribosomal protein uS19

Chain S

Ribosomal protein uS13

Chain T

Ribosomal protein eS19

Chain d

Ribosomal protein uS14