HL_4W23_033

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGC

Length

4 nucleotides

Bulged bases

None detected

QA status

Incomplete nucleotides: 1760, 1761, 1771, 1772

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W23_033 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.391

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4W23|1|2|G|1760
4W23|1|2|U|1761
4W23|1|2|G|1771
4W23|1|2|C|1772

Current chains

Chain 2

18S ribosomal RNA

Nearby chains