HL_4W2E_099

3D structure

PDB id

4W2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGCAACCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2E_099 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.107

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4W2E|1|a|C|1314
4W2E|1|a|U|1315
4W2E|1|a|G|1316
4W2E|1|a|C|1317
4W2E|1|a|A|1318
4W2E|1|a|A|1319
4W2E|1|a|C|1320
4W2E|1|a|C|1321
4W2E|1|a|C|1322
4W2E|1|a|G|1323

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13

Chain n

30S ribosomal protein S14 type Z

Chain s

30S ribosomal protein S19