HL_4W2F_019

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2F_019 not in the Motif Atlas

Homologous match to HL_4LFB_019

Geometric discrepancy: 0.0645

The information below is about HL_4LFB_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4W2F|1|AA|C|862
4W2F|1|AA|U|863
4W2F|1|AA|A|864
4W2F|1|AA|A|865
4W2F|1|AA|C|866
4W2F|1|AA|G|867

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AE

30S Ribosomal Protein S5

Chain AH

30S Ribosomal Protein S8