HL_4W2F_031

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4W2F|1|AA|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2F_031 not in the Motif Atlas

Homologous match to HL_6CZR_102

Geometric discrepancy: 0.3465

The information below is about HL_6CZR_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52463.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

4W2F|1|AA|C|1445
4W2F|1|AA|U|1446
4W2F|1|AA|A|1447
4W2F|1|AA|C|1452
4W2F|1|AA|G|1456
4W2F|1|AA|G|1457

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AT

30S Ribosomal Protein S20